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July 16-19, 2012
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BIOCOMP'12: Thursday, July 19, 2012 Schedule

Last modified 2012-07-08 17:43

To select a different schedule CLICK HERE

SESSION 10-BIOCOMP: COMPARATIVE SEQUENCE, GENOME ANALYSIS, GENOME ASSEMBLY, & GENOME
                  SCALE COMPUTATIONAL METHODS
                  Co-Chairs: Dr. Tin-Chun Chu,
                             Seton Hall University, South Orange, New Jersey, USA
                  July 19, 2012 (Thursday); 08:00am - 11:20am
                  (LOCATION: Ballroom 7)

08:00 - 08:20am:  On Identifying Metabolic Functions of Noncoding RNAs in S. cerevisiae
                  Eric Struminger, Max H Garzon, Sungchul Ji
                  University of Illinois at Urbana-Champaign, Illinois, USA;
                  University of Memphis, USA;  Rutgers University, USA

08:20 - 08:40am:  Denovo Identification of "Heterotigs" towards Accurate and In-phase
                  Assembly of Complex Plant Genomes
                  Jared C. Price, Paul Bodily, Quinn Snell, Mark Clement
                  Brigham Young University, Utah, USA

08:40 - 09:00am:  On Using Information-Theoretic Quantities in Characterization
                  Dissimilarity of DNA Strings
                  Fairul Mohd-Zaid, Annie X. Shen, and Kathryn Farris
                  711 HPW AFRL/RHCV, Wright-Patterson Air Force Base, Dayton, Ohio, USA;
                  Ohio University, Athens, Ohio, USA

09:00 - 09:20am:  Computational Criteria for the Disablement of Human GAPDH Pseudogenes
                  Christopher S. Theisen, Kirsten A. Seidler, Norbert W.Seidler
                  Kansas City University of Medicine and Biosciences, Missouri, USA

09:20 - 09:40am:  FPGA Based Accelerator For Bioinformatics Haplotype Inference Application
                  Naim Harb, Mazen A. R. Saghir, Zaher Dawy, and Carlos Valderrama
                  University of Mons, Belgium;  University of Texas A&M at Qatar, Doha,
                  Qatar;  American University of Beirut, Lebanon

09:40 - 10:00am:  Methodological Procedure to Decision Making with Fuzzy Inference for
                  SNP Discovery
                  Wagner Arbex, Marta Martins, Marcos Vinicius Silva, Luis Alfredo Carvalho
                  Brazilian Agricultural Research Corporation, Brazil;
                  Federal University of Rio de Janeiro, Brazil

10:00 - 10:20am:  Bioinformatic Analysis of Cyanobacterial Mercuric Resistance Related
                  Genes and Identification of Synechococcus sp. IU 625 Putative Mercuric
                  Resistance Genes
                  Lee H. Lee, Chiedozie Okafor, Matthew J. Rienzo, and Tin-Chun Chu
                  Montclair State University, Montclair, New Jersey, USA;
                  Seton Hall University, South Orange, New Jersey, USA

10:20 - 10:40am:  BREAK

10:40 - 11:00am:  Accelerating the Smith-Waterman Algorithm for Bio-sequence Matching
                  on GPU
                  Qianghua Zhu, Fei Xia, and Guoqing Jin
                  Electronic Engineering College, Naval University of Engineering,
                  Wuhan, P. R. China

11:00 - 11:20am:  Aligning Highly Variable DNA Sequences Using the W-curve and SQL
                  Steven Lembark, Shadi Beidas, Douglas Cork
                  Workhorse Computing, St. Louis, MO, USA;
                  Illinois Institute of Technology, Chicago, Illinois, USA


SESSION 11-BIOCOMP: SOFTWARE PACKAGES & OTHER COMPUTATIONAL TOPICS IN MEDICINE, BIOINFORMATICS
                  AND COMPUTATIONAL BIOLOGY
                  Co-Chairs: Daniel Munro, University of North Texas, Texas, USA
                  July 19, 2012 (Thursday); 11:20am - 02:00pm
                  (LOCATION: Ballroom 7)

11:20 - 11:40am:  ScaffoldScaffolder: An Aggressive Scaffold Finishing Algorithm
                  Paul M. Bodily, Jared C. Price, Mark J. Clement, Quinn Snell
                  Brigham Young University, Provo, Utah, USA

11:40 - 12:00pm:  FREE SLOT

12:00 - 12:20pm:  "Pimp My Science Lab" - Typesafe Management of Physical Quantities Using New
                  Programming Idioms
                  Jamie Lawson and Ross Henderson
                  Lockheed Martin, San Diego, California, USA;
                  National Institutes of Health, Maryland, USA

12:20 - 12:40pm:  Research on BRATUMSS System of Detecting Transmission Model and Breast
                  Tissues Target Spectrum Distribution
                  Zhifu Tao, Zhonglin Han, Meng Yao, Yizhou Yao, Blair Fleet, Erik D. Goodman,
                  Huiyan Wang, John R. Deller
                  Suzhou Vocational University, Suzhou, P. R. China;
                  East China Normal University, Shanghai, P. R. China;
                  Michigan State University, East Lansing, Michigan, USA

12:40 - 01:20pm:  LUNCH (On Your Own)

01:20 - 01:40pm:  Open-source Dental Laboratories Web Content Management Systems vs. Commercial
                  Web Content Management Systems
                  Reham Alabduljabbar and Samir El-masri
                  College of Computer & Information Sciences, King Saud University, Riyadh,
                  Saudi Arabia

01:40 - 02:00pm:  Bioinformatics Web Services
                  Mohamad I. Ladan
                  Haigazian University, Beirut, Lebanon


02:00 - 05:40pm:  During this period, BIOCOMP attendees are encouraged to participate
                  in sessions belonging to ICAI'12, IKE'12, or PDPTA'12. These sessions
                  discuss topics that significantly overlap the scope of BIOCOMP'12.

To select a different schedule CLICK HERE
Announcements
All tracks of WORLDCOMP have received high citations
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Condolences
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WORLDCOMP'12 Exhibition
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2012 Co-Sponsors
Bioinformatics & Computational Biology Program
George Mason University, USA

Biomedical Cybernetics Laboratory
HST of Harvard University & MIT, USA

Minnesota Supercomputing Institute
University of Minnesota, USA

Center for Cyber Defense, NCAT

Argonne's Leadership Computing Facility of Argonne National Laboratory
Illinois, USA

The Center for Advanced Studies in Identity Sciences
(CASIS: NC A&T;, Carnegie Mellon, Clemson, UNC Wilmington

Knowledge Management & Intelligent System Center (KMIS)
University of Siegen, Germany

Intelligent Cyberspace Engineering Lab., ICEL
Texas A&M; University, Texas, USA
UMIT, Institute of Bioinformatics and Translational Research
Austria

Hawkeye Radiology Informatics
Department of Radiology, College of Medicine, University of Iowa, USA

The International Council on Medical and Care Compunetics
US Chapter of World Academy of Science

Supercomputer Software Department (SSD)
Institute of Computational Mathematics & Mathematical Geophysics, Russian Academy of Sciences


International Society of Intelligent Biological Medicine

Medical Image HPC & Informatics Lab (MiHi Lab)
University of Iowa, USA

High Performance Computing for Nanotechnology (HPCNano)

Manx Telecom

Computer Science Research, Education, and Applications Press;

World Academy of Biomedical Sciences and Technologies




Super Micro Computer, Inc.,
San Jose, California, USA


Intel Corporation


Altera Corporation


Hodges Health

Leading Knowledge


Science Publication

 


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