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BIOCOMP'11: July 19, 2011 Schedule

Last modified 2011-06-25 06:43

To select a different schedule CLICK HERE

6:30am - 5:00pm:  REGISTRATION (Second Floor, Conference Lobby: 1-5)


SESSION 3-BIOCOMP: COMPUTATIONAL METHODS FOR MICROARRAY, GENE EXPRESSION ANALYSIS &
                  GENE REGULATORY NETWORKS
                  Co-Chairs: TBA
                  July 19, 2011 (Tuesday); 08:00am - 09:40am
                  (LOCATION: Ballroom 3)

08:00 - 08:20am:  Gene Selection Using the Multidimensional False Discovery Rate and the
                  Power of Replicates
                  Ahmed Moussa, Mounir Maouene, and Brigitte Vannier
                  LTI Laboratory, National School of Applied Sciences Abdelmalek Essaadi
                  University, Morocco; IPBC, University of Poitiers Poitiers, France

08:20 - 08:40am:  Letting All Have a Say: A Novel Method for microRNA RT-PCR Normalization
                  Rehman Qureshi and Ahmet Sacan
                  Drexel University, Philadelphia, USA

08:40 - 09:00am:  EMMA: An EM-based Imputation Technique for Handling Missing Sample-Values
                  in Microarray Expression Profiles
                  Edward A. Salinas, Amitava Karmaker and Stephen Kwek
                  University of Wisconsin-Stout, Menomonie, Wisconsin, USA;
                  Live Search, Microsoft Corporation, One Microsoft way, Redmond, Washington, USA

09:00 - 09:20am:  Markov Model Checking of Probabilistic Boolean Networks Representations of Genes 
                  Marie Lluberes and Jaime Seguel
                  University of Puerto Rico at Mayaguez, Puerto Rico

09:20 - 09:40am:  Reliability Analysis of Classification of Gene Expression Data
                  Sujata Dash and B. N. Patra
                  KMBB College of Engineering, Bhubaneswar, BijuPatnaik University of Technology,
                  India; Gandhi Institute of Engineering and Technolgy, Biju Patnaik University
                  of Technology, Gunupur, India


SESSION 4-BIOCOMP: PROTEIN CLASSIFICATION & STRUCTURE PREDICTION, EVOLUTIONARY, &
                  COMPUTATIONAL MOLECULAR & STRUCTURAL BIOLOGY
                  Co-Chairs: TBA
                  July 19, 2011 (Tuesday); 09:40am - 12:20pm
                  (LOCATION: Ballroom 3)

09:40 - 10:00am:  Solving Planted Motif Problem Using Modeling Method
                  Subramanyam Desaraju and Ravi Mukkamala
                  Old Dominion University, Virginia, USA

10:00 - 10:20am:  Predicting Sequence and Structural Specificities of RNA Binding Regions
                  Recognized by Splicing Factor SRSF1
                  Xin Wang, Lang Li, Junjie lv, Kejun Wang, Jeremy Sanford, and Yunlong Liu
                  Indiana University School of Medicine, Indianapolis, Indiana, USA;
                  Harbin Engineering University, Harbin, P. R. China; University of California
                  Santa Cruz, Santa Cruz, California, USA

10:20 - 10:40am:  BREAK

10:40 - 11:00am:  Stuctural Analysis of Molecular Networks: AMES Mutagenicity
                  Laurin AJ Mueller, Karl G. Kugler, and Matthias Dehmer
                  University for Health Sciences, Medical Informatics & Technology (UMIT), Austria

11:00 - 11:20am:  SCOPE: An Open-Source, C++ Implementation for Calculation of Protein
                  Energetics from First Principles
                  Matthew Fawcett, Stephanie Irausquin, Mikhail Simin, and Homayoun Valafar
                  University of South Carolina, Columbia, South Carolina, USA

11:20 - 11:40am:  A Study of Correlations Between the Definition and Application of the Gene Ontology
                  Yuji Mo, Catherine Anderson, and Stephen D. Scott
                  University of Nebraska, Lincoln, Nebraska, USA

11:40 - 12:00pm:  Probability Density Profile Analysis: A Method for Identifying Novel Protein
                  Structures
                  A. Fahim, S. Irausquin, M. Fawcett, M. Simin, and H. Valafar
                  University of South Carolina, Columbia, South Carolina, USA

12:00 - 12:20pm:  Phylogenetic Analysis Workflow Using the BioExtract Server
                  Yosr Bouhlal, Douglas M Jennewein, Carol Lushbough
                  University of South Dakota, Vermillion, South Dakota, USA

12:20 - 01:20pm:  LUNCH (On Your Own)


SESSION 5-BIOCOMP: COMPARATIVE SEQUENCE, GENOME ANALYSIS, GENOME ASSEMBLY, &
                  GENOME SCALE COMPUTATIONAL METHODS
                  Co-Chairs: Prof. Hongwei Wu* and Dr. Lan Zhu**
                  *Georgia Institute of Technology, Georgia, USA;
                  **Oklahoma State University, USA
                  July 19, 2011 (Tuesday); 01:20pm - 03:00pm
                  (LOCATION: Ballroom 3)

01:20 - 01:40pm:  Enhancement on the Predictive Power of the Prediction Model for Human
                  Genomic DNA Methylation
                  Hao Zheng, Shi-Wen Jiang, and Hongwei Wu
                  Georgia Institute of Technology, Atlanta, Georgia, USA;
                  Mercer University School of Medicine - Savannah Campus, Georgia, USA

01:40 - 02:00pm:  A Regression-based Approach for Estimating Recombination Rate from Population
                  Genomic Data
                  Lan Zhu, Feng Feng, and Carlos Bustamante
                  Oklahoma State University, Stillwater, Oklahoma, USA; Duke University,
                  Durham, North Carolina, USA; Stanford University, Stanford, California, USA

02:00 - 02:20pm:  Genetic Matching: A Better Algorithm for Adjusting Covariate Imbalance for
                  Statistical Data Analysis and Modeling
                  Kao-Tai Tsai and Karl E. Peace
                  Jiann-Ping Hsu College of Public Health, Georgia Southern University,
                  Statesboro, Georgia, USA

02:20 - 02:40pm:  Development Approach and Architecture of GenSAS
                  Taein Lee, Il-Hyung Cho, Sook Jung, and Dorrie Main
                  Washington State University, Pullman, Washington, USA

02:40 - 03:00pm:  Application of Wcurves and TSP to Clustering HIV1 Sequences
                  Douglas Cork, Steven Lembark, Jerome Kim, and Nelson Michael
                  Illinois Institute of Technology, Chicago, Illinois, USA;
                  Workhorse Computing, St. Louis, MO, USA; US Military HIV Research Program,
                  Walter Reed Army Institute of Research, Rockville, Maryland, USA


03:00 - 03:40pm:  DISCUSSION/POSTER SESSION B-BIOCOMP (Refreshments will be available)
                  July 19, 2011 (Tuesday)
                  (LOCATION: Hallways of Ballrooms 1-5)

                  O. Inhibitory Activity of Coumarins On HIV-1 PR: A Virtual Screening and
                     Molecular Docking Study
                     M. Singh, D. Srivastava, K. Mishra, and S. A. H. Naqvi
                     Amity Institute of Biotechnology, Amity University, India;
                     BioDiscovery-Solutions for Future, Agra, India
                  O. A Proposal of Clinical Decision Support System Architecture 
                     Shaker H. El-Sappagh, Samir El-Masri
                     College of Science, King Saud University; Minia University, Egypt
                  O. Modeling as a Tool for Controling the Production of Biofuels: Methanol
                     from a Biomass
                     Aghareed M. Tayeb, N. A. Mostafa and I. A. Ashour
                     Faculty of Engineering, Minia University, Minia, Egypt
                  O. A Novel Fuzzy Similarity Measure Approach for Enriching the Retrieving Process
                     of Case Based Reasoning in IKCBRC
                     A. Khelassi
                     Abou Bakr Belkaid University, Tlemcen, Algeria
                  O. Anode Effects on Microbial Fuel Cell Efficiency
                     M. Brant, G. Chu, M.W. Claire, J. Curnutt, E. Gomez, A. Gonzalez, C. Gott,
                     M. Grigsby, R. Hovanesian, G. Kaladjian, J. Losch, A. Nguyen, A. Olano,
                     G.W. Payton, A. Razzak, K. Rotunno, S. Saleemi, A. Scheppelmann, K.E. Schubert,
                     G. Solis, E. Statmore, K. Symer
                     California State University, San Bernardino, California, USA; University of
                     Washington, Seattle, Washington, USA; California Polytechnic State University,
                     San Luis Obispo, California, USA; California State Polytechnic University,
                     Pomona, California, USA; NASA Ames, USA
                  O. Meta-Heuristic Simulation for Protein Folding in Hydrophobic Polar 2D Lattice Model
                     Sudhanshu Shrivastava, Garima Srivastava Gulshan Wadhwa, Navita Shrivastava
                     A.P.S. University, Rewa (M.P.), India; DBT, New Delhi, India
                  O. Dynamics of HIV-1 Associated Kaposi Sarcoma During HAART Therapy
                     Frank Nani and Mingxian Jin
                     Fayetteville State University, Fayetteville, North Carolina, USA
                  O. Electronic Health Records and Mobile Technology Use in Northwest Florida
                     Medical Practices
                     Ed Rodgers
                     University of West Florida, Pensacola, Florida, USA


SESSION 6-BIOCOMP: DRUG TARGETS, IMMUNOTHERAPY, & COMPUTATIONAL METHODS FOR SYSTEM &
                  MICRO BIOLOGY
                  Co-Chairs: Prof. Hongwei Wu, Georgia Institute of Technology, Georgia, USA
                  July 19, 2011 (Tuesday); 03:20pm - 05:00pm
                  (LOCATION: Ballroom 3)

03:40 - 04:00pm:  The peak of a Pandemic? A Phylogenetic Analysis of the H1N1 Influenza Virus
                  from 2009 to Present
                  Anthony Deeter, Mark Dalman, Gayathri Nimishakavi, and Zhong-Hui Duan
                  University of Akron, Akron, Ohio, USA

04:00 - 04:20pm:  Classifying HIV-1 Circulating Recombinant Forms
                  Steven Eliuk, Keith Ruiter, and Pierre Boulanger
                  University of Alberta, Edmonton, Canada

04:20 - 04:40pm:  Self-Regulating Physiologically Based Pharmacokinetic Model and Creation of
                  Drug Concentration Profiles in Plasma and Tissues
                  Stanislav Polinkevych
                  Recherche et Education en Mathematique, Quebec, Canada

04:40 - 05:00pm:  Identifying Co-targets to Fight Drug Resistance Based on a Random Walk Model
                  Liang-Chun Chen, Hsiang-Yuan Yeh, Cheng-Yu Yeh, Carlos Roberto Arias, Von-Wun Soo
                  National Tsing Hua University, Taiwan


SESSION 7-BIOCOMP: SOFTWARE PACKAGES + METHODS & OTHER COMPUTATIONAL TOPICS IN
                  BIOINFORMATICS + RELATED DISCUSSIONS
                  Co-Chairs: Dr. Matthew He, Nova Southeastern University, Florida, USA
                  July 19, 2011 (Tuesday); 05:00pm - 06:00pm
                  (LOCATION: Ballroom 3)

05:00 - 05:20pm:  The Genetic Code, 8-Dimensional Hypercomplex Numbers and Dyadic Shifts
                  Sergey Petoukhov
                  Head of Biomechanical Systems Lab, Mechanical Engineering Research Institute,
                  Russian Academy of Sciences, Moscow, Russia

05:20 - 05:40pm:  Amino Acids, Euclidean Distance and Symmetric Matrix
                  Matthew He, Miguel A. Jimenez-Montano, and Paolo E. Ricci
                  Nova Southeastern University, Ft. Lauderdale, Florida, USA

05:40 - 06:00pm:  Laterality of Motor Control Before the Advent of Experimental Psychology:
                  David Kinnebrook's Handedness and His "Error of Judgement" at Greenwich in 1796
                  Iraj Derakhshan, MD
                  Formerly at Case Western Reserve and Cincinnati Universities, USA; in private
                  practice, Neurology, USA


06:00 - 09:00pm:  TUTORIALS
                 

To select a different schedule CLICK HERE


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Universal Conference Management Systems & Support
San Diego, California, USA
Contact: Kaveh Arbtan

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